Fuzzy logic based approaches for gene regulatory network inference

作者:

Highlights:

• The gene regulatory network inference (GRNI) is a well-posed problem in the field of Bioinformatics and Systems Biology. In the last 2-3 decades, fuzzy logic and it hybridization with other computational intelligence approaches has shown a wide applications in the GRNI.

• In this article, we performed a critical review of fuzzy logic and its hybrid approaches for GRNI proposed in the last 2-3 decades.

• We have also classified fuzzy based hybrid approach and performed a comparison in terms of their strength, weakness and applications.

摘要

•The gene regulatory network inference (GRNI) is a well-posed problem in the field of Bioinformatics and Systems Biology. In the last 2-3 decades, fuzzy logic and it hybridization with other computational intelligence approaches has shown a wide applications in the GRNI.•In this article, we performed a critical review of fuzzy logic and its hybrid approaches for GRNI proposed in the last 2-3 decades.•We have also classified fuzzy based hybrid approach and performed a comparison in terms of their strength, weakness and applications.

论文关键词:Fuzzy logic,Gene regulatory network,Network inference,Fuzzy clustering,Fuzzy inference system,Systems biology

论文评审过程:Received 7 May 2018, Revised 10 December 2018, Accepted 12 December 2018, Available online 17 December 2018, Version of Record 13 June 2019.

论文官网地址:https://doi.org/10.1016/j.artmed.2018.12.004