Volume 27, Number 12, December 2020
Patient safety and quality improvement: Ethical principles for a regulatory approach to bias in healthcare machine learning.

Melissa D. McCradden Shalmali Joshi James A. Anderson Mjaye Mazwi Anna Goldenberg Randi Zlotnik Shaul

Latent bias and the implementation of artificial intelligence in medicine.

Matthew Decamp Charlotta Lindvall

Addressing health disparities in the Food and Drug Administration's artificial intelligence and machine learning regulatory framework.

Kadija Ferryman

MINIMAR (MINimum Information for Medical AI Reporting): Developing reporting standards for artificial intelligence in health care.

Tina Hernandez-Boussard Selen Bozkurt John P. A. Ioannidis Nigam H. Shah

Assessing the practice of data quality evaluation in a national clinical data research network through a systematic scoping review in the era of real-world data.

Jiang Bian Tianchen Lyu Alexander Loiacono Tonatiuh Mendoza Viramontes Gloria P. Lipori Yi Guo Yonghui Wu Mattia C. F. Prosperi Thomas J. George Christopher A. Harle Elizabeth A. Shenkman William R. Hogan

A systematic literature review of Native American and Pacific Islanders' perspectives on health data privacy in the United States.

Riley Taitingfong Cinnamon S. Bloss Cynthia Triplett Julie Cakici Nanibaa' Garrison Shelley Cole Julie A. Stoner Lucila Ohno-Machado

Electronic health record-based disease surveillance systems: A systematic literature review on challenges and solutions.

Ali Aliabadi Abbas Sheikhtaheri Hossein Ansari

A scoping review of clinical decision support tools that generate new knowledge to support decision making in real time.

Anna Ostropolets Linying Zhang George Hripcsak

Innovative use of health informatics to augment contact tracing during the COVID-19 pandemic in an acute hospital.

Narayan Venkataraman Beng Hoong Poon Chuin Siau

Clinical informatics accelerates health system adaptation to the COVID-19 pandemic: examples from Colorado.

Chen-Tan Lin Kelly Bookman Amber Sieja Katie Markley Richard L. Altman Jeffrey Sippel Katharine Perica Lori Reece Christopher Davis Edward Horowitz Larissa Pisney Peter D. Sottile David P. Kao Bonnie Adrian Melissa Szkil Julie Griffin Jeanie Youngwerth Brendan Drew Jonathan Pell

Characteristics of telehealth users in NYC for COVID-related care during the coronavirus pandemic.

Ellerie Weber Sarah J. Miller Varuna Astha Teresa Janevic Emma Benn

A rapidly deployed, interactive, online visualization system to support fatality management during the coronavirus disease 2019 (COVID-19) pandemic.

Smiti Kaul Cameron Coleman David Gotz

Clinical concept extraction using transformers.

Xi Yang Jiang Bian William R. Hogan Yonghui Wu

Democratizing EHR analyses with FIDDLE: a flexible data-driven preprocessing pipeline for structured clinical data.

Shengpu Tang Parmida Davarmanesh Yanmeng Song Danai Koutra Michael W. Sjoding Jenna Wiens

A citizen science initiative for open data and visualization of COVID-19 outbreak in Kerala, India.

Jijo Pulickiyil Ulahannan Nikhil Narayanan Nishad Thalhath Prem Prabhakaran Sreekanth Chaliyeduth Sooraj P. Suresh Musfir Mohammed E. Rajeevan Sindhu Joseph Akhil Balakrishnan Jeevan Uthaman Manoj Karingamadathil Sunil Thonikkuzhiyil Thomas Unnikrishnan Sureshkumar Shabeesh Balan Neetha Nanoth Vellichirammal

Trialstreamer: A living, automatically updated database of clinical trial reports.

Iain James Marshall Benjamin E. Nye Joël Kuiper Anna Noel-Storr Rachel Marshall Rory Maclean Frank Soboczenski Ani Nenkova James Thomas Byron C. Wallace

Better synonyms for enriching biomedical search.

Lana Yeganova Sun Kim Qingyu Chen Grigory Balasanov W. John Wilbur Zhiyong Lu

Probabilistic forecasting of surgical case duration using machine learning: model development and validation.

York Jiao Anshuman Sharma Arbi Ben Abdallah Thomas M. Maddox Thomas George Kannampallil

Reporting of demographic data and representativeness in machine learning models using electronic health records.

Selen Bozkurt Eli M. Cahan Martin G. Seneviratne Ran Sun Juan Antonio Lossio-Ventura John P. A. Ioannidis Tina Hernandez-Boussard

Leveraging health system telehealth and informatics infrastructure to create a continuum of services for COVID-19 screening, testing, and treatment.

Dee W. Ford Jillian B. Harvey James McElligott Kathryn King Kit N. Simpson Shawn Valenta Emily H. Warr Tasia Walsh Ellen Debenham Carla Teasdale Stéphane M. Meystre Jihad S. Obeid Christopher Metts Leslie A. Lenert

User-centered design of a longitudinal care plan for children with medical complexity.

Arti D. Desai Grace Wang Julia Wignall Dylan Kinard Vidhi Singh Sherri Adams Wanda Pratt

OrderRex clinical user testing: a randomized trial of recommender system decision support on simulated cases.

Andre Kumar Rachael C. Aikens Jason Hom Lisa Shieh Jonathan Chiang David Morales Divya Saini Mark A. Musen Michael T. M. Baiocchi Russ B. Altman Mary K. Goldstein Steven M. Asch Jonathan H. Chen

Determining sample size and length of follow-up for smartphone-based digital phenotyping studies.

Ian Barnett John Torous Harrison T. Reeder Justin Baker Jukka-Pekka Onnela

An approach to predicting patient experience through machine learning and social network analysis.

Vitej Bari Jamie S. Hirsch Joseph Narvaez Robert Sardinia Kevin R. Bock Michael I. Oppenheim Marsha Meytlis

Setting the agenda: an informatics-led policy framework for adaptive CDS.

Jeffery Smith


Volume 27, Number 11, November 2020
Corrigendum to: Rapid Deployment of Inpatient Telemedicine In Response to COVID-19 Across Three Health Systems.

Stacie Vilendrer Birju Patel Whitney Chadwick Michael Hwa Steven Asch Natalie Pageler Rajiv Ramdeo Erika A. Saliba-Gustafsson Philip Strong Christopher Sharp

Health informatics support for outbreak management: How to respond without an electronic health record?

Emmanuelle Sylvestre René-Michel Thuny Elsa Cecilia-Joseph Papa Gueye Cyrille Chabartier Yannick Brouste Hossein Mehdaoui Fatiha Najioullah Sandrine Pierre-François Sylvie Abel André Cabié Moustapha Drame

Home telemonitoring makes early hospital discharge of COVID-19 patients possible.

L. A. Grutters K. I Majoor E. S. K. Mattern J. A. Hardeman C. F. P. van Swol A. D. M. Vorselaars

Barriers to hospital electronic public health reporting and implications for the COVID-19 pandemic: the authors' reply.

A. Jay Holmgren Nate C. Apathy Julia Adler-Milstein

Response to authors of "Barriers to hospital electronic public health reporting and implications for the COVID-19 pandemic".

Catherine J. Staes James Jellison Mary Beth Kurilo Rick Keller Hadi Kharrazi

Deployment of information technology to facilitate patient care in the isolation ward during COVID-19 pandemic.

Ming-Ju Tsai Wen-Tsung Tsai Hui-Sheng Pan Chia-Kuei Hu An-Ni Chou Shian-Fei Juang Ming-Kuo Huang Ming-Feng Hou

Telehealth in response to the COVID-19 pandemic: Implications for rural health disparities.

Kelly A. Hirko Jean M. Kerver Sabrina Ford Chelsea Szafranski John Beckett Chris Kitchen Andrea L. Wendling

Virtual care: a 'Zoombie' apocalypse?

Aviv Shachak Maria Alcocer Alkureishi

Recommendations for patient similarity classes: results of the AMIA 2019 workshop on defining patient similarity.

Nathan D. Seligson Jeremy L. Warner William S. Dalton David Martin Robert S. Miller Debra Patt Kenneth L. Kehl Matvey B. Palchuk Gil Alterovitz Laura K. Wiley Ming Huang Feichen Shen Yanshan Wang Khoa A. Nguyen Anthony F. Wong Funda Meric-Bernstam Elmer V. Bernstam James L. Chen

Recommendations for improving national clinical datasets for health equity research.

Rebecca G. Block Jon Puro Erika Cottrell Mitchell R. Lunn M. J. Dunne Ana R. Quiñones Bowen Chung William Pinnock Georgia M. Reid John Heintzman

A call for social informatics.

Matthew S. Pantell Julia Adler-Milstein Michael D. Wang Aric A. Prather Nancy E. Adler Laura M. Gottlieb

A systematic literature review of automatic Alzheimer's disease detection from speech and language.

Ulla Petti Simon Baker Anna Korhonen

A rapid review of gender, sex, and sexual orientation documentation in electronic health records.

Francis Y. Lau Marcy G. Antonio Kelly Davison Roz Queen Aaron Devor

Social determinants of health in electronic health records and their impact on analysis and risk prediction: A systematic review.

Min Chen Xuan Tan Rema Padman

Remote symptom monitoring integrated into electronic health records: A systematic review.

Julie Gandrup Syed Mustafa Ali John McBeth Sabine N. van der Veer William G. Dixon

Building for the future: the creation of a residency training track to foster innovation through clinical informatics in psychiatry.

Evan Vitiello Michael Kane Alissa Hutto Austin Hall

Using cloud-based, open-source technology to evaluate, improve, and rapidly disseminate community-based intervention data.

Carlene A. Mayfield Margaret E. Gigler Leslie Snapper Jainmary Jose Jackie Tynan Victoria C. Scott Michael Dulin

A refined methodology for validation of information models derived from flowsheet data and applied to a genitourinary case.

Bonnie L. Westra Kay Lytle LuAnn Whittenburg Mischa Adams Samira Ali Meg Furukawa Stephanie Hartleben Mary L. Hook Steven G. Johnson Sarah Collins Rossetti Theresa (Tess) Settergren

User reactions to COVID-19 screening chatbots from reputable providers.

Alan R. Dennis Antino Kim Mohammad Rahimi Sezgin Ayabakan

SCOR: A secure international informatics infrastructure to investigate COVID-19.

Jean Louis Raisaro Francesco Marino Juan Ramón Troncoso-Pastoriza Raphaelle Beau-Lejdstrom Riccardo Bellazzi Robert Murphy Elmer V. Bernstam Henry Wang Mauro Bucalo Yong Chen Assaf Gottlieb Arif O. Harmanci Miran Kim Yejin Kim Jeffrey G. Klann Catherine Klersy Bradley A. Malin Marie Méan Fabian Prasser Luigia Scudeller Ali Torkamani Julien Vaucher Mamta Puppala Stephen T. C. Wong Milana Frenkel-Morgenstern Hua Xu Baba Maiyaki Musa Abdulrazaq G. Habib Trevor Cohen Adam B. Wilcox Hamisu M. Salihu Heidi Sofia Xiaoqian Jiang Jean-Pierre Hubaux

An application to support COVID-19 occupational health and patient tracking at a Veterans Affairs medical center.

Nathanael R. Fillmore Danne C. Elbers Jennifer La Theodore C. Feldman Sung Feng-Chi Robert B. Hall Vinh Nguyen Nicholas Link Robert Zwolinski Svitlana Dipietro Steven J. Miller Anahit Aleksanyan Sergey Goryachev Paul Corcoran Steven J. Bergstrom Michael A. Parenteau Robert S. Sprague David J. Thornton Jane A. Driver Judith M. Strymish Stewart Evans Benjamin Colonna Mary T. Brophy Nhan V. Do

Clinical informatics subspecialists: characterizing a novel evolving workforce.

Sheena Desai Arash Mostaghimi Vinod E. Nambudiri

Preserving privacy for pediatric patients and families: use of confidential note types in pediatric ambulatory care.

Chase R. Parsons Jonathan D. Hron Fabienne C. Bourgeois

Envisioning an artificial intelligence documentation assistant for future primary care consultations: A co-design study with general practitioners.

Ahmet Baki Kocaballi Kiran Ijaz Liliana Laranjo Juan C. Quiroz Dana Rezazadegan Huong Ly Tong Simon Willcock Shlomo Berkovsky Enrico W. Coiera

A machine learning-based clinical decision support system to identify prescriptions with a high risk of medication error.

Jennifer Corny Asok Rajkumar Olivier Martin Xavier Dode Jean-Patrick Lajonchère Olivier Billuart Yvonnick Bézie Anne Buronfosse

PheMap: a multi-resource knowledge base for high-throughput phenotyping within electronic health records.

Neil S. Zheng QiPing Feng Vern Eric Kerchberger Juan Zhao Todd L. Edwards Nancy J. Cox C. Michael Stein Dan M. Roden Joshua C. Denny Wei-Qi Wei

Synthetic minority oversampling of vital statistics data with generative adversarial networks.

Aki Koivu Mikko Sairanen Antti Airola Tapio Pahikkala

Refining Boolean queries to identify relevant studies for systematic review updates.

Amal Alharbi Mark Stevenson

Formal representation of patients' care context data: the path to improving the electronic health record.

Tiago K. Colicchio Pavithra I. Dissanayake James J. Cimino

Underrepresented racial minorities in biomedical informatics doctoral programs: graduation trends and academic placement (2002-2017).

Kevin Wiley Brian E. Dixon Shaun J. Grannis Nir Menachemi

Toward diversity, equity, and inclusion in informatics, health care, and society.

Suzanne Bakken


Volume 27, Number 10, October 2020
A review of auditing techniques for the Unified Medical Language System.

Ling Zheng Zhe He Duo Helen Wei Vipina Kuttichi Keloth Jung-Wei Fan Luke Lindemann Xinxin Zhu James J. Cimino Yehoshua Perl

Mapping scientific landscapes in UMLS research: a scientometric review.

Meen Chul Kim Seojin Nam Fei Wang Yongjun Zhu

UMLS users and uses: a current overview.

Liz Amos David Anderson Stacy Brody Anna Ripple Betsy L. Humphreys

The Unified Medical Language System SPECIALIST Lexicon and Lexical Tools: Development and applications.

Chris J. Lu Amanda Payne James G. Mork

Representation of EHR data for predictive modeling: a comparison between UMLS and other terminologies.

Laila Rasmy Firat Tiryaki Yujia Zhou Yang Xiang Cui Tao Hua Xu Degui Zhi

Cross-lingual Unified Medical Language System entity linking in online health communities.

Yonatan Bitton Raphael Cohen Tamar Schifter Eitan Bachmat Michael Elhadad Noémie Elhadad

Clinical concept normalization with a hybrid natural language processing system combining multilevel matching and machine learning ranking.

Long Chen Wenbo Fu Yu Gu Zhiyong Sun Haodan Li Enyu Li Li Jiang Yuan Gao Yang Huang

A transformation-based method for auditing the IS-A hierarchy of biomedical terminologies in the Unified Medical Language System.

Fengbo Zheng Jay Shi Yuntao Yang W. Jim Zheng Licong Cui

The impact of learning Unified Medical Language System knowledge embeddings in relation extraction from biomedical texts.

Maxwell A. Weinzierl Ramón Maldonado Sanda M. Harabagiu

Assessing the enrichment of dietary supplement coverage in the Unified Medical Language System.

Jake Vasilakes Anusha Bompelli Jeffrey R. Bishop Terrence J. Adam Olivier Bodenreider Rui Zhang

Use of word and graph embedding to measure semantic relatedness between Unified Medical Language System concepts.

Yuqing Mao Kin Wah Fung

The 2019 National Natural language processing (NLP) Clinical Challenges (n2c2)/Open Health NLP (OHNLP) shared task on clinical concept normalization for clinical records.

Sam Henry Yanshan Wang Feichen Shen Özlem Uzuner

Using UMLS for electronic health data standardization and database design.

Andrew P. Reimer Alex Milinovich

Unified Medical Language System resources improve sieve-based generation and Bidirectional Encoder Representations from Transformers (BERT)-based ranking for concept normalization.

Dongfang Xu Manoj Gopale Jiacheng Zhang Kris Brown Edmon Begoli Steven Bethard

Can Unified Medical Language System-based semantic representation improve automated identification of patient safety incident reports by type and severity?

Ying Wang Enrico W. Coiera Farah Magrabi

The UMLS knowledge sources at 30: indispensable to current research and applications in biomedical informatics.

Betsy L. Humphreys Guilherme Del Fiol Hua Xu


Volume 27, Number 9, September 2020
Reply to Barthell et al.

Robert W. Turer Ian Jones S. Trent Rosenbloom Corey M. Slovis Michael J. Ward

Letter to Editor.

Edward Barthell Jonathan Handler

Using informatics to improve cancer surveillance.

Wendy Blumenthal Temitope O. Alimi Sandra F. Jones David E. Jones Joseph D. Rogers Vicki B. Benard Lisa C. Richardson

Centers for Disease Control and Prevention 2019 novel coronavirus disease (COVID-19) information management: addressing national health-care and public health needs for standardized data definitions and codified vocabulary for data exchange.

Macarena Garcia Nikolay Lipskiy James Tyson Roniqua Watkins E. Stein Esser Teresa Kinley

Economic evaluations of big data analytics for clinical decision-making: a scoping review.

Lytske Bakker Jos Aarts Carin Uyl-de Groot William K. Redekop

Why real-world health information technology performance transparency is challenging, even when everyone (claims to) want it.

Julia Adler-Milstein Crishyashi Thao

Rapid development of visualization dashboards to enhance situation awareness of COVID-19 telehealth initiatives at a multihospital healthcare system.

Ram A. Dixit Stephen Hurst Katharine T. Adams Christian Boxley Kristi Lysen-Hendershot Sonita S. Bennett Ethan Booker Raj M. Ratwani

Implementation of a digital chatbot to screen health system employees during the COVID-19 pandemic.

Timothy J. Judson Anobel Y. Odisho Jerry J. Young Olivia Bigazzi David Steuer Ralph Gonzales Aaron B. Neinstein

Electronic health records contain dispersed risk factor information that could be used to prevent breast and ovarian cancer.

Thomas H. Payne Lue Ping Zhao Calvin Le Peter Wilcox Troy Yi Jesse Hinshaw Duncan Hussey Alex Kostrinsky-Thomas Malika Hale John Brimm Fuki M. Hisama

COVID-19 TestNorm: A tool to normalize COVID-19 testing names to LOINC codes.

Xiao Dong Jianfu Li Ekin Soysal Jiang Bian Scott L. DuVall Elizabeth Hanchrow Hongfang Liu Kristine E. Lynch Michael E. Matheny Karthik Natarajan Lucila Ohno-Machado Serguei Pakhomov Ruth Madeleine Reeves Amy M. Sitapati Swapna Abhyankar Theresa Cullen Jami Deckard Xiaoqian Jiang Robert Murphy Hua Xu

TREC-COVID: rationale and structure of an information retrieval shared task for COVID-19.

Kirk Roberts Tasmeer Alam Steven Bedrick Dina Demner-Fushman Kyle Lo Ian Soboroff Ellen M. Voorhees Lucy Lu Wang William R. Hersh

Scalability and cost-effectiveness analysis of whole genome-wide association studies on Google Cloud Platform and Amazon Web Services.

Inès Krissaane Carlos De Niz Alba Gutiérrez-Sacristán Gabor Korodi Nneka Ede Ranjay Kumar Jessica Lyons Arjun K. Manrai Chirag J. Patel Isaac S. Kohane Paul Avillach

Rapid design and deployment of intensive outpatient, group-based psychiatric care using telehealth during coronavirus disease 2019 (COVID-19).

Amber W. Childs Adam Unger Luming Li

Generating sequential electronic health records using dual adversarial autoencoder.

Dongha Lee Hwanjo Yu Xiaoqian Jiang Deevakar Rogith Meghana Gudala Mubeen Tejani Qiuchen Zhang Li Xiong

Are specific elements of electronic health record use associated with clinician burnout more than others?

Ross W. Hilliard Jacqueline Haskell Rebekah L. Gardner

Piloting a model-to-data approach to enable predictive analytics in health care through patient mortality prediction.

Timothy Bergquist Yao Yan Thomas Schaffter Thomas Yu Vikas Pejaver Noah Hammarlund Justin Prosser Justin Guinney Sean D. Mooney

Risk prediction of delirium in hospitalized patients using machine learning: An implementation and prospective evaluation study.

Stefanie Jauk Diether Kramer Birgit Großauer Susanne Rienmüller Alexander Avian Andrea Berghold Werner Leodolter Stefan Schulz

Resilience of clinical text de-identified with "hiding in plain sight" to hostile reidentification attacks by human readers.

David S. Carrell Bradley A. Malin David J. Cronkite John S. Aberdeen Cheryl Clark Muqun (Rachel) Li Dikshya Bastakoty Steve Nyemba Lynette Hirschman

A graph-based method for reconstructing entities from coordination ellipsis in medical text.

Chi Yuan Yongli Wang Ning Shang Ziran Li Ruxin Zhao Chunhua Weng

Clinical evaluation and diagnostic yield following evaluation of abnormal pulse detected using Apple Watch.

Kirk D. Wyatt Lisa R. Poole Aidan F. Mullan Stephen L. Kopecky Heather A. Heaton

Understanding enterprise data warehouses to support clinical and translational research.

Thomas R. Campion Jr. Catherine K. Craven David A. Dorr Boyd M. Knosp

Predicting complications of diabetes mellitus using advanced machine learning algorithms.

Branimir Ljubic Ameen Abdel Hai Marija Stanojevic Wilson Diaz Daniel Polimac Martin Pavlovski Zoran Obradovic

Informatics impact requires effective, scalable tools and standards-based infrastructure.

Suzanne Bakken


Volume 27, Number 8, August 2020
Corrigendum to: Accounting for data variability in multi-institutional distributed deep learning for medical imaging.

Niranjan Balachandar Ken Chang Jayashree Kalpathy-Cramer Daniel L. Rubin

It is time for computable evidence synthesis: The COVID-19 Knowledge Accelerator initiative.

Brian S. Alper Joshua E. Richardson Harold P. Lehmann Vignesh Subbian

Principles of Large-scale Evidence Generation and Evaluation across a Network of Databases (LEGEND).

Martijn J. Schuemie Patrick B. Ryan Nicole Pratt Ruijun Chen Seng Chan You Harlan M. Krumholz David Madigan George Hripcsak Marc A. Suchard

Rapid implementation of a COVID-19 remote patient monitoring program.

Tucker Annis Susan Pleasants Gretchen M. Hultman Elizabeth Lindemann Joshua A. Thompson Stephanie Billecke Sameer Badlani Genevieve B. Melton

An artificial intelligence approach to COVID-19 infection risk assessment in virtual visits: A case report.

Jihad S. Obeid Matthew Davis Matthew Turner Stéphane M. Meystre Paul M. Heider Edward C. O'Bryan Leslie A. Lenert

Automatic detection of hand hygiene using computer vision technology.

Amit Singh Albert Haque Alexandre Alahi Serena Yeung Michelle Guo Jill R. Glassman William Beninati Terry Platchek Li Fei-Fei Arnold Milstein

Self-reported COVID-19 symptoms on Twitter: an analysis and a research resource.

Abeed Sarker Sahithi Lakamana Whitney Hogg-Bremer Angel Xie Mohammed Ali Al-Garadi Yuan-Chi Yang

Barriers to hospital electronic public health reporting and implications for the COVID-19 pandemic.

A. Jay Holmgren Nate C. Apathy Julia Adler-Milstein

Veterans' response to an automated text messaging protocol during the COVID-19 pandemic.

Jason J. Saleem Jacob M. Read Boyd M. Loehr Kathleen L. Frisbee Nancy R. Wilck John J. Murphy Brian M. Vetter Jennifer Herout

Laboratory information system requirements to manage the COVID-19 pandemic: A report from the Belgian national reference testing center.

Matthias Weemaes Steven Martens Lize Cuypers Jan Van Elslande Katrien Hoet Joris Welkenhuysen Ria Goossens Stijn Wouters Els Houben Kirsten Jeuris Lies Laenen Katrien Bruyninckx Kurt Beuselinck Emmanuel André Melissa Depypere Stefanie Desmet Katrien Lagrou Marc Van Ranst Ann K. L. C. Verdonck Jermaine Goveia

Impact of integrated graphical display on expert and novice diagnostic performance in critical care.

Thomas J. Reese Guilherme Del Fiol Joseph E. Tonna Kensaku Kawamoto Noa Segall Charlene R. Weir Brekk C. Macpherson Polina V. Kukhareva Melanie C. Wright

Incorporating home healthcare nurses' admission information needs to inform data standards.

Paulina S. Sockolow Kathryn H. Bowles Christine Wojciechowicz Ellen J. Bass

Large-scale evidence generation and evaluation across a network of databases (LEGEND): assessing validity using hypertension as a case study.

Martijn J. Schuemie Patrick B. Ryan Nicole Pratt Ruijun Chen Seng Chan You Harlan M. Krumholz David Madigan George Hripcsak Marc A. Suchard

Constructing co-occurrence network embeddings to assist association extraction for COVID-19 and other coronavirus infectious diseases.

David Oniani Guoqian Jiang Hongfang Liu Feichen Shen

The tradeoffs between safety and alert fatigue: Data from a national evaluation of hospital medication-related clinical decision support.

Zoe Co A. Jay Holmgren David C. Classen Lisa P. Newmark Diane L. Seger Melissa Danforth David W. Bates

Fold-stratified cross-validation for unbiased and privacy-preserving federated learning.

Romain Bey Romain Goussault François Grolleau Mehdi Benchoufi Raphaël Porcher

sureLDA: A multidisease automated phenotyping method for the electronic health record.

Yuri Ahuja Doudou Zhou Zeling He Jiehuan Sun Victor M. Castro Vivian S. Gainer Shawn N. Murphy Chuan Hong Tianxi Cai

Integrated displays to improve chronic disease management in ambulatory care: A SMART on FHIR application informed by mixed-methods user testing.

Rebecca L. Curran Polina V. Kukhareva Teresa Taft Charlene R. Weir Thomas J. Reese Claude J. Nanjo Salvador Rodriguez-Loya Douglas K. Martin Phillip B. Warner David E. Shields Michael C. Flynn Jonathan P. Boltax Kensaku Kawamoto

Variation in electronic test results management and its implications for patient safety: A multisite investigation.

Judith Thomas Maria R. Dahm Julie Li Peter Smith Jacqui Irvine Johanna I. Westbrook Andrew Georgiou

Hospital adoption of electronic health record functions to support age-friendly care: results from a national survey.

Julia Adler-Milstein Katherine Raphael Alice Bonner Leslie Pelton Terry Fulmer

Reconsidering hospital EHR adoption at the dawn of HITECH: implications of the reported 9% adoption of a "basic" EHR.

Jordan Everson Joshua C. Rubin Charles P. Friedman

Characterizing outpatient problem list completeness and duplications in the electronic health record.

Edward Chia-Heng Wang Adam Wright

Celebrating G. Octo Barnett, MD.


Volume 27, Number 7, July 2020
COVID-19 transforms health care through telemedicine: Evidence from the field.

Devin M. Mann Ji Chen Rumi Chunara Paul A. Testa Oded Nov

Impact of the digital divide in the age of COVID-19.

Anita Ramsetty Cristin Adams

Telehealth: Simply a pandemic response or here to stay?

Suzanne Bakken

Rapid Deployment of Inpatient Telemedicine In Response to COVID-19 Across Three Health Systems.

Stacie Vilendrer Birju Patel Whitney Chadwick Michael Hwa Steven Asch Natalie Pageler Rajiv Ramdeo Erika A. Saliba-Gustafsson Philip Strong Christopher Sharp

Rapid development of telehealth capabilities within pediatric patient portal infrastructure for COVID-19 care: barriers, solutions, results.

Pious D. Patel Jared Cobb Deidre Wright Robert W. Turer Tiffany Jordan Amber Humphrey Adrienne L. Kepner Gaye Smith S. Trent Rosenbloom

Measure what matters: Counts of hospitalized patients are a better metric for health system capacity planning for a reopening.

Sehj Kashyap Saurabh Gombar Steve Yadlowsky Alison Callahan Jason A. Fries Benjamin A. Pinsky Nigam H. Shah

Enabling health information exchange at a US Poison Control Center.

Mollie R. Cummins Guilherme Del Fiol Barbara I. Crouch Pallavi Ranade-Kharkar Aly Khalifa Andrew Iskander Darren K. Mann Matt Hoffman Sidney N. Thornton Todd L. Allen Heather Bennett

Development of the Gender, Sex, and Sexual Orientation ontology: Evaluation and workflow.

Clair A. Kronk Judith W. Dexheimer

Learning from local to global: An efficient distributed algorithm for modeling time-to-event data.

Rui Duan Chongliang Luo Martijn J. Schuemie Jiayi Tong C. Jason Liang Howard H. Chang Mary Regina Boland Jiang Bian Hua Xu John H. Holmes Christopher B. Forrest Sally C. Morton Jesse A. Berlin Jason H. Moore Kevin B. Mahoney Yong Chen

Unsupervised machine learning and prognostic factors of survival in chronic lymphocytic leukemia.

Caitlin E. Coombes Zachary B. Abrams Suli Li Lynne V. Abruzzo Kevin R. Coombes

Teledentistry in the diagnosis of oral lesions: A systematic review of the literature.

Anacláudia Pereira da Costa Flores Samara Andreolla Lazaro Cynthia Goulart Molina-Bastos Verônica Lucas de Oliveira Guattini Roberto Nunes Umpierre Marcelo Rodrigues Gonçalves Vinicius Coelho Carrard

Empirical assessment of bias in machine learning diagnostic test accuracy studies.

Ryan J. Crowley Yuan Jin Tan John P. A. Ioannidis

Dr. Agent: Clinical predictive model via mimicked second opinions.

Junyi Gao Cao Xiao Lucas M. Glass Jimeng Sun

An interactive online dashboard for tracking COVID-19 in U.S. counties, cities, and states in real time.

Benjamin D. Wissel P. J. Van Camp Michal Kouril Chad Weis Tracy A. Glauser Peter S. White Isaac S. Kohane Judith W. Dexheimer

When past is not a prologue: Adapting informatics practice during a pandemic.

Thomas George Kannampallil Randi E. Foraker Albert M. Lai Keith F. Woeltje Philip R. O. Payne

Opportunities at the intersection of work and health: Developing the occupational data for health information model.

Stacey Marovich Genevieve B. Luensman Barbara Wallace Eileen Storey

The My Cancer Genome clinical trial data model and trial curation workflow.

Neha Jain Kathleen F. Mittendorf Marilyn Holt Michele L. LeNoue-Newton Ian Maurer Clinton Miller Matthew Stachowiak Michelle Botyrius James Cole Christine Micheel Mia A. Levy

Public health reporting and outbreak response: synergies with evolving clinical standards for interoperability.

Ninad K. Mishra Jon Duke Leslie Lenert Saugat Karki

Time event ontology (TEO): to support semantic representation and reasoning of complex temporal relations of clinical events.

Fang Li Jingcheng Du Yongqun He Hsing-yi Song Mohcine Madkour Guozheng Rao Yang Xiang Yi Luo Henry W. Chen Sijia Liu Liwei Wang Hongfang Liu Hua Xu Cui Tao

What patients "see" doctors in online fever clinics during COVID-19 in Wuhan?

Gang Li Guorui Fan Yanyan Chen Zhaohua Deng

Following data as it crosses borders during the COVID-19 pandemic.

Joseph M. Plasek Chunlei Tang Yangyong Zhu Yajun Huang David W. Bates

Explainable artificial intelligence models using real-world electronic health record data: a systematic scoping review.

Seyedeh Neelufar Payrovnaziri Zhaoyi Chen Pablo Rengifo-Moreno Tim Miller Jiang Bian Jonathan H. Chen Xiuwen Liu Zhe He

How hospitals in mainland China responded to the outbreak of COVID-19 using information technology-enabled services: An analysis of hospital news webpages.

Aihua Yan Yi Zou Dinesh A. Mirchandani

The bird's-eye view: A data-driven approach to understanding patient journeys from claims data.

Katherine Bobroske Christine Larish Anita Cattrell Margrét V. Bjarnadóttir Lawrence Huan

Nurse workarounds in the electronic health record: An integrative review.

Daniel Fraczkowski Jeffrey Matson Karen Dunn Lopez

Effects of mood and aging on keystroke dynamics metadata and their diurnal patterns in a large open-science sample: A BiAffect iOS study.

Claudia Vesel Homa Rashidisabet John Zulueta Jonathan P. Stange Jennifer Duffecy Faraz Hussain Andrea Piscitello John S. Bark Scott A. Langenecker Shannon Young Erin Mounts Larsson Omberg Peter C. Nelson Raeanne C. Moore Dave Koziol Keith Bourne Casey C. Bennett Olusola Ajilore Alexander P. Demos Alex D. Leow


Volume 27, Number 6, June 2020
Issues to consider with electronic consultations.

David E. Winchester

Use of self-administered surveys through QR code and same center telemedicine in a walk-in clinic in the era of COVID-19.

Eduardo Perez-Alba Laura Nuzzolo-Shihadeh Jaime Eugenio Espinosa-Mora Adrián Camacho-Ortiz

Problems with the problem list: challenges of transparency in an era of patient curation.

Amy S. Porter Jolene O'callaghan Kristin A. Englund Robert R. Lorenz Eric Kodish

Mobile apps for real-world evidence in health care.

Madison Milne-Ives Michelle Helena van Velthoven Edward Meinert

Is it time for computable evidence synthesis?

Adam G. Dunn Florence T. Bourgeois

Electronic personal protective equipment: A strategy to protect emergency department providers in the age of COVID-19.

Robert W. Turer Ian Jones S. Trent Rosenbloom Corey M. Slovis Michael J. Ward

Balancing health privacy, health information exchange, and research in the context of the COVID-19 pandemic.

Leslie Lenert Brooke Yeager McSwain

Telehealth transformation: COVID-19 and the rise of virtual care.

Jedrek Wosik Marat Fudim Blake Cameron Ziad Gellad Alex Cho Donna Phinney Simon Curtis Matthew Roman Eric G. Poon Jeffrey M. Ferranti Jason N. Katz James E. Tcheng

Using the RE-AIM framework to evaluate internal and external validity of mobile phone-based interventions in diabetes self-management education and support.

Yilin Yoshida Sonal J. Patil Ross C. Brownson Suzanne A. Boren Min Kim Rosie Dobson Kayo Waki Deborah A. Greenwood Astrid Torbjørnsen Ambady Ramachandran Christopher Masi Vivian A. Fonseca Eduardo J. Simoes

A systematic review of mobile health technologies to support self-management of concurrent diabetes and hypertension.

Wonchan Choi Shengang Wang Yura Lee Hyunkyoung Oh Zhi Zheng

Construction of 5G all-wireless network and information system for cabin hospitals.

Bin Zhou Qing Wu Xuefei Zhao Wenchao Zhang Wenjun Wu Zi Guo

Spoken words as biomarkers: using machine learning to gain insight into communication as a predictor of anxiety.

George Demiris Kristin L. Corey Magan Debra Parker Oliver Karla T. Washington Chad Chadwick Jeffrey D. Voigt Sam Brotherton Mary D. Naylor

Varying rates of patient identity verification when using computerized provider order entry.

Emilie Fortman A. Zachary Hettinger Jessica L. Howe Allan Fong Zoe Pruitt Kristen E. Miller Raj M. Ratwani

A dynamic reaction picklist for improving allergy reaction documentation in the electronic health record.

Liqin Wang Suzanne V. Blackley Kimberly G. Blumenthal Sharmitha Yerneni Foster R. Goss Ying-Chih Lo Sonam N. Shah Carlos A. Ortega Zfania Tom Korach Diane L. Seger Li Zhou

Simulation modeling validity and utility in colorectal cancer screening delivery: A systematic review.

Heather Anne Smith Peyman Varshoei Robin Boushey Craig E. Kuziemsky

Using word embeddings to improve the privacy of clinical notes.

Mohamed Abdalla Moustafa Abdalla Frank Rudzicz Graeme Hirst

High-priority drug-drug interaction clinical decision support overrides in a newly implemented commercial computerized provider order-entry system: Override appropriateness and adverse drug events.

Heba Edrees Mary G. Amato Adrian Wong Diane L. Seger David W. Bates

Where is my infusion pump? Harnessing network dynamics for improved hospital equipment fleet management.

Diego A. Martinez Jiarui Cai Jimi B. Oke Andrew S. Jarrell Felipe Feijoo Jeffrey Appelbaum Eili Y. Klein Sean Barnes Scott R. Levin

Development and validation of phenotype classifiers across multiple sites in the observational health data sciences and informatics network.

Mehr Kashyap Martin G. Seneviratne Juan M. Banda Thomas Falconer Borim Ryu Sooyoung Yoo George Hripcsak Nigam H. Shah

Is a switch to a different electronic health record associated with a change in patient satisfaction?

Frederick North Jennifer L. Pecina Sidna M. Tulledge-Scheitel Rajeev Chaudhry John C. Matulis Jon O. Ebbert

Rapid design and implementation of an integrated patient self-triage and self-scheduling tool for COVID-19.

Timothy J. Judson Anobel Y. Odisho Aaron B. Neinstein Jessica Chao Aimee Williams Christopher Miller Tim Moriarty Nathaniel Gleason Gina Intinarelli Ralph Gonzales

Rapid response to COVID-19: health informatics support for outbreak management in an academic health system.

J. Jeffery Reeves Hannah M. Hollandsworth Francesca J. Torriani Randy Taplitz Shira Abeles Ming Tai-Seale Marlene Millen Brian J. Clay Christopher A. Longhurst

Domains, tasks, and knowledge for health informatics practice: results of a practice analysis.

Cynthia S. Gadd Elaine B. Steen Carla M. Caro Sandra Greenberg Jeffrey J. Williamson Douglas B. Fridsma

Informatics is a critical strategy in combating the COVID-19 pandemic.

Suzanne Bakken


Volume 27, Number 5, May 2020
Patient characteristics associated with objective measures of digital health tool use in the United States: A literature review.

Sarah S. Nouri Julia Adler-Milstein Crishyashi Thao Prasad Acharya Jill Barr-Walker Urmimala Sarkar Courtney R. Lyles

Serious games for smoking prevention and cessation: A systematic review of game elements and game effects.

M. E. Derksen S. van Strijp A. E. Kunst Joost G. Daams Monique W. M. Jaspers M. P. Fransen

How does medical scribes' work inform development of speech-based clinical documentation technologies? A systematic review.

Brian D. Tran Yunan Chen Songzi Liu Kai Zheng

A systematic review of the impact of health information technology on nurses' time.

Esther C. Moore Clare L. Tolley David W. Bates Sarah P. Slight

Using and improving distributed data networks to generate actionable evidence: the case of real-world outcomes in the Food and Drug Administration's Sentinel system.

Jeffrey S. Brown Judith C. Maro Michael D. Nguyen Robert Ball

Early experiences with combined fellowship training in clinical informatics.

Jonathan P. Palma Jonathan D. Hron Anthony A. Luberti

Identified themes of interactive visualizations overlayed onto EHR data: an example of improving birth center operating room efficiency.

Andrew Stirling Tracy Tubb Emily S. Reiff Chad A. Grotegut Jennifer Gagnon Weiyi Li Gail Bradley Eric G. Poon Benjamin Alan Goldstein

Assessment of the Nursing Quality Indicators for Reporting and Evaluation (NQuIRE) database using a data quality index.

Shanoja Naik Stephanie Voong Megan Bamford Kyle Smith Angela Joyce Doris Grinspun

How accurate is the medical record? A comparison of the physician's note with a concealed audio recording in unannounced standardized patient encounters.

Saul J. Weiner Shiyuan Wang Brendan Kelly Gunjan Sharma Alan Schwartz

Classifying non-small cell lung cancer types and transcriptomic subtypes using convolutional neural networks.

Kun-Hsing Yu Feiran Wang Gerald J. Berry Christopher Ré Russ B. Altman Michael Snyder Isaac S. Kohane

EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning.

Tsung-Ting Kuo Rodney A. Gabriel Krishna R. Cidambi Lucila Ohno-Machado

The new International Classification of Diseases 11th edition: a comparative analysis with ICD-10 and ICD-10-CM.

Kin Wah Fung Julia Xu Olivier Bodenreider

A system uptake analysis and GUIDES checklist evaluation of the Electronic Asthma Management System: A point-of-care computerized clinical decision support system.

Jeffrey Lam Shin Cheung Natalie Paolucci Courtney Price Jenna Sykes Samir Gupta

Racial differences in patient consent policy preferences for electronic health information exchange.

Carolyn L. Turvey Dawn M. Klein Kim M. Nazi Susan T. Haidary Omar Bouhaddou Nelson Hsing Margaret Donahue

"How did you get to this number?" Stakeholder needs for implementing predictive analytics: a pre-implementation qualitative study.

Natalie C. Benda Lala Tanmoy Das Erika L. Abramson Katherine Blackburn Amy Thoman Rainu Kaushal Yongkang Zhang Jessica S. Ancker

Accounting for data variability in multi-institutional distributed deep learning for medical imaging.

Niranjan Balachandar Ken Chang Jayashree Kalpathy-Cramer Daniel L. Rubin

Unmet information needs of clinical teams delivering care to complex patients and design strategies to address those needs.

Deborah J. Cohen Tamar Wyte-Lake David A. Dorr Rachel Gold Richard J. Holden Richelle J. Koopman Joshua Colasurdo Nathaniel Warren

Visual analogies, not graphs, increase patients' comprehension of changes in their health status.

Meghan Reading Turchioe Lisa V. Grossman Annie C. Myers Dawon Baik Parag Goyal Ruth M. Masterson Creber

Self-monitoring diabetes with multiple mobile health devices.

Ryan J. Shaw Qing Yang A. Barnes D. Hatch Matthew J. Crowley Allison Vorderstrasse Jacqueline Vaughn Anna Diane Allison A Lewinski M. Jiang Janee Stevenson Dori M. Steinberg

Celebrating the International Year of the Nurse and Midwife: A look at nursing in JAMIA.

Suzanne Bakken Gregory L. Alexander


Volume 27, Number 4, April 2020
The 2019 Fellow Cohort of the American College of Medical Informatics.

Language matters: precision health as a cross-cutting care, research and policy agenda.

Philip R. O. Payne Don E. Detmer

National health information technology priorities for research: A policy and development agenda.

Teresa Zayas-Cabán Kevin J. Chaney Donald W. Rucker

Leveraging the health information technology infrastructure to advance federal research priorities.

Teresa Zayas-Cabán Amy P. Abernethy Patricia Flatley Brennan Stephanie Devaney Anthony R. Kerlavage Rachel Ramoni P. Jon White

Have you got the time? Challenges using vendor electronic health record metrics of provider efficiency.

Jonathan D. Hron Eli M. Lourie

Metrics for assessing physician activity using electronic health record log data.

Christine A. Sinsky Adam Rule Genna R. Cohen Brian G. Arndt Tait D. Shanafelt Christopher D. Sharp Sally L. Baxter Tai-Seale Ming Sherry H. F. Yan You Chen Julia Adler-Milstein Michelle R. Hribar

Design and analytic considerations for using patient-reported health data in pragmatic clinical trials: report from an NIH Collaboratory roundtable.

Frank W. Rockhold Jessica D. Tenenbaum Rachel L. Richesson Keith A. Marsolo Emily C. O'Brien

A tutorial on calibration measurements and calibration models for clinical prediction models.

Yingxiang Huang Wentao Li Fima Macheret Rodney A. Gabriel Lucila Ohno-Machado

How the presentation of patient information and decision-support advisories influences opioid prescribing behavior: A simulation study.

Mustafa I. Hussain Ariana M. Nelson Brent G. Yeung Lauren Sukumar Kai Zheng

The impact of transitioning from availability of outside records within electronic health records to integration of local and outside records within electronic health records.

Julia Adler-Milstein Michael D. Wang

Investigating the impact of disease and health record duration on the eMERGE algorithm for rheumatoid arthritis.

Vanessa L. Kronzer Liwei Wang Hongfang Liu John M. Davis III Jeffrey A. Sparks Cynthia S. Crowson

Physician understanding, explainability, and trust in a hypothetical machine learning risk calculator.

William K. Diprose Nicholas Buist Ning Hua Quentin-Gabriel Thurier George Shand Reece Robinson

Does BERT need domain adaptation for clinical negation detection?

Chen Lin Steven Bethard Dmitriy Dligach Farig Sadeque Guergana Savova Timothy A. Miller

Hospital adoption of multiple health information exchange approaches and information accessibility.

Jordan Everson Evan Butler

A customizable deep learning model for nosocomial risk prediction from critical care notes with indirect supervision.

Travis R. Goodwin Dina Demner-Fushman

Temporal condition pattern mining in large, sparse electronic health record data: A case study in characterizing pediatric asthma.

Elizabeth A. Campbell Ellen J. Bass Aaron J. Masino

Use and impact of an online community for hospital patients.

Shefali Haldar Sonali R. Mishra Yoojung Kim Andrea L. Hartzler Ari H. Pollack Wanda Pratt

iDISK: the integrated DIetary Supplements Knowledge base.

Rubina F. Rizvi Jake Vasilakes Terrence J. Adam Genevieve B. Melton Jeffrey R. Bishop Jiang Bian Cui Tao Rui Zhang

Electronic health records and burnout: Time spent on the electronic health record after hours and message volume associated with exhaustion but not with cynicism among primary care clinicians.

Julia Adler-Milstein Wendi Zhao Rachel Willard-Grace Margae Knox Kevin Grumbach

Depression screening using mobile phone usage metadata: a machine learning approach.

Rouzbeh Razavi Amin Gharipour Mojgan Gharipour

Measuring implementation feasibility of clinical decision support alerts for clinical practice recommendations.

Rachel L. Richesson Catherine J. Staes Brian J. Douthit Traci Thoureen Daniel J. Hatch Kensaku Kawamoto Guilherme Del Fiol

A hybrid approach to record linkage using a combination of deterministic and probabilistic methodology.

Toan C. Ong Lindsey M. Duca Michael G. Kahn Tessa L. Crume

Hot topics in clinical informatics.

Suzanne Bakken


Volume 27, Number 3, March 2020
Corrigendum to: Evaluating a digital sepsis alert in a London multisite hospital network: a natural experiment using electronic health record data.

Interfaces for collecting data from patients: 10 golden rules.

Andrew J. Vickers Ling Y. Chen Peter D. Stetson

A governance model for the application of AI in health care.

Sandeep Reddy Sonia Allan Simon Coghlan Paul Cooper

Using electronic health record audit logs to study clinical activity: a systematic review of aims, measures, and methods.

Adam Rule Michael F. Chiang Michelle R. Hribar

Electronic consultations (E-consults) and their outcomes: a systematic review.

Varsha G. Vimalananda Jay D. Orlander Melissa K. Afable B. Graeme Fincke Amanda K. Solch Seppo T. Rinne Eun Ji Kim Sarah L. Cutrona Dylan D. Thomas Judith L. Strymish Steven R. Simon

Deep learning in clinical natural language processing: a methodical review.

Stephen Wu Kirk Roberts Surabhi Datta Jingcheng Du Zongcheng Ji Yuqi Si Sarvesh Soni Qiong Wang Qiang Wei Yang Xiang Bo Zhao Hua Xu

Understanding the nature and scope of clinical research commentaries in PubMed.

James R. Rogers Hollis Mills Lisa V. Grossman Andrew Goldstein Chunhua Weng

Pediatric patient portal use in one health system.

Péter Szilágyi Rebecca Valderrama Sitaram Vangala Christina Albertin David Okikawa Michael Sloyan Nathalie Lopez Carlos F. Lerner

On classifying sepsis heterogeneity in the ICU: insight using machine learning.

Zina M. Ibrahim Honghan Wu Ahmed Hamoud Lukas Stappen Richard J. B. Dobson Andrea Agarossi

"Just tell me what's going on": The views of parents of children with genetic conditions regarding the research use of their child's electronic health record.

Sara M. Andrews Melissa Raspa Anne Edwards Rebecca Moultrie Lauren Turner-Brown Laura Wagner Alexandra Alvarez Rivas Mary Katherine Frisch Anne C. Wheeler

Using elastic nets to estimate frailty burden from routinely collected national aged care data.

Max Moldovan Jyoti Khadka Renuka Visvanathan Steve Wesselingh Maria C. Inacio

medExtractR: A targeted, customizable approach to medication extraction from electronic health records.

Hannah L. Weeks Cole Beck Elizabeth McNeer Michael L. Williams Cosmin Adrian Bejan Joshua C. Denny Leena Choi

A combined strategy of feature selection and machine learning to identify predictors of prediabetes.

Kushan De Silva Daniel Jönsson Ryan T. Demmer

Understanding and detecting defects in healthcare administration data: Toward higher data quality to better support healthcare operations and decisions.

Yili Zhang Günes Koru

Learning from electronic health records across multiple sites: A communication-efficient and privacy-preserving distributed algorithm.

Rui Duan Mary Regina Boland Zixuan Liu Yue Liu Howard H. Chang Hua Xu Haitao Chu Christopher H. Schmid Christopher B. Forrest John H. Holmes Martijn J. Schuemie Jesse A. Berlin Jason H. Moore Yong Chen

Protecting patient privacy in survival analyses.

Luca Bonomi Xiaoqian Jiang Lucila Ohno-Machado

Temporal convolutional networks allow early prediction of events in critical care.

Finneas J. R. Catling Anthony H. Wolff

Privacy-preserving model learning on a blockchain network-of-networks.

Tsung-Ting Kuo Jihoon Kim Rodney A. Gabriel

Innovation is key for advancing the science of biomedical and health informatics and for publishing in JAMIA.

Suzanne Bakken


Volume 27, Number 2, February 2020
Safety concerns with consumer-facing mobile health applications and their consequences: a scoping review.

Saba Akbar Enrico W. Coiera Farah Magrabi

Mining social media for prescription medication abuse monitoring: a review and proposal for a data-centric framework.

Abeed Sarker Annika DeRoos Jeanmarie Perrone

Best practices for data visualization: creating and evaluating a report for an evidence-based fall prevention program.

Srijesa Khasnabish Zoe Burns Madeline Couch Mary Mullin Randall Newmark Patricia C. Dykes

Lessons learned implementing a complex and innovative patient safety learning laboratory project in a large academic medical center.

Alexandra C. Businger Theresa E. Fuller Jeffrey L. Schnipper Sarah Collins Rossetti Kumiko O. Schnock Ronen Rozenblum Anuj K. Dalal James C. Benneyan David W. Bates Patricia C. Dykes

Adverse drug event rates in pediatric pulmonary hypertension: a comparison of real-world data sources.

Alon Geva Steven H. Abman Shannon F. Manzi Dunbar D. Ivy Mary Mullen John Griffin Chen Lin Guergana K. Savova Kenneth D. Mandl

The impact of drug order complexity on prospective medication order review and verification time.

David S. Dakwa Vincent D. Marshall Bruce W. Chaffee

Evaluating a digital sepsis alert in a London multisite hospital network: a natural experiment using electronic health record data.

Kate Honeyford Graham S. Cooke Anne Kinderlerer Elizabeth Williamson Mark Gilchrist Alison H. Holmes The Sepsis Big Room Ben Glampson Abdulrahim Mulla Ceire Costelloe

Using REDCap and Apple ResearchKit to integrate patient questionnaires and clinical decision support into the electronic health record to improve sexually transmitted infection testing in the emergency department.

Fahd A. Ahmad Philip R. O. Payne Ian Lackey Rachel Komeshak Kenneth Kenney Brianna Magnusen Christopher Metts Thomas Bailey

Uncovering the relationship between food-related discussion on Twitter and neighborhood characteristics.

V. G. Vinod Vydiswaran Daniel M. Romero Xinyan Zhao Deahan Yu Iris N. Gomez-Lopez Jin Xiu Lu Bradley E. Iott Ana Baylin Erica C. Jansen Philippa Clarke Veronica J. Berrocal Robert Goodspeed Tiffany C. Veinot

An augmented estimation procedure for EHR-based association studies accounting for differential misclassification.

Jiayi Tong Jing Huang Jessica Chubak Xuan Wang Jason H. Moore Rebecca A. Hubbard Yong Chen

Characterizing communication patterns among members of the clinical care team to deliver breast cancer treatment.

Bryan D. Steitz Kim M. Unertl Mia A. Levy

Mining Twitter to assess the determinants of health behavior toward human papillomavirus vaccination in the United States.

Hansi Zhang Christopher Wheldon Adam G. Dunn Cui Tao Jinhai Huo Rui Zhang Mattia C. F. Prosperi Yi Guo Jiang Bian

Patient preferences for visualization of longitudinal patient-reported outcomes data.

Samantha Stonbraker Tiffany Porras Rebecca Schnall

Informatics opportunities to involve patients in hospital safety: a conceptual model.

Shefali Haldar Sonali R. Mishra Ari H. Pollack Wanda Pratt

Consumer health information and question answering: helping consumers find answers to their health-related information needs.

Dina Demner-Fushman Yassine Mrabet Asma Ben Abacha

Emotion sharing in remote patient monitoring of patients with chronic kidney disease.

Robin Huang Na Liu Mary Ann Nicdao Mary Mikaheal Tanya Baldacchino Annabelle Albeos Kathy Petoumenos Kamal Sud Jinman Kim

Consumer- and patient-oriented informatics innovation: continuing the legacy of Warner V. Slack.

Suzanne Bakken


Volume 27, Number 1, January 2020
Corrigendum to: Real world evidence in cardiovascular medicine: assuring data validity in electronic health record-based studies.

Training medical students and residents in the use of electronic health records: a systematic review of the literature.

Akshay Rajaram Zachary Hickey Nimesh Patel Joseph Newbigging Brent Wolfrom

Using clinical reasoning ontologies to make smarter clinical decision support systems: a systematic review and data synthesis.

Pavithra I. Dissanayake Tiago K. Colicchio James J. Cimino

Integrating pharmacogenomics into the electronic health record by implementing genomic indicators.

Pedro J. Caraballo Joseph A. Sutton Jyothsna Giri Jessica A. Wright Wayne T. Nicholson Iftikhar J. Kullo Mark A. Parkulo Suzette J. Bielinski Ann M. Moyer

Derivation and validation of a machine learning record linkage algorithm between emergency medical services and the emergency department.

Colby Redfield Abdulhakim Tlimat Yoni Halpern David W. Schoenfeld Edward Ullman David A. Sontag Larry A. Nathanson Steven Horng

Imputation and characterization of uncoded self-harm in major mental illness using machine learning.

Praveen Kumar Anastasiya Nestsiarovich Stuart J. Nelson Berit Kerner Douglas J. Perkins Christophe G. Lambert

A step closer to nationwide electronic health record-based chronic disease surveillance: characterizing asthma prevalence and emergency department utilization from 100 million patient records through a novel multisite collaboration.

Yasir Tarabichi Jake Goyden Rujia Liu Steven Lewis Joseph Sudano David C. Kaelber

A maximum likelihood approach to electronic health record phenotyping using positive and unlabeled patients.

Lingjiao Zhang Xiruo Ding Yanyuan Ma Naveen Muthu Imran Ajmal Jason H. Moore Daniel S. Herman Jinbo Chen

Leaf: an open-source, model-agnostic, data-driven web application for cohort discovery and translational biomedical research.

Nicholas J. Dobbins Clifford H. Spital Robert A. Black Jason M. Morrison Bas de Veer Elizabeth Zampino Robert D. Harrington Bethene D. Britt Kari A. Stephens Adam B. Wilcox Peter Tarczy-Hornoch Sean D. Mooney

Ensuring electronic medical record simulation through better training, modeling, and evaluation.

Ziqi Zhang Chao Yan Diego A. Mesa Jimeng Sun Bradley A. Malin

Automatic extraction of cancer registry reportable information from free-text pathology reports using multitask convolutional neural networks.

Mohammed M. Alawad Shang Gao John X. Qiu Hong-Jun Yoon James Blair Christian Lynne Penberthy Brent J. Mumphrey Xiao-Cheng Wu Linda Coyle Georgia D. Tourassi

Supporting the use of standardized nursing terminologies with automatic subject heading prediction: a comparison of sentence-level text classification methods.

Hans Moen Kai Hakala Laura-Maria Peltonen Henry Suhonen Filip Ginter Tapio Salakoski Sanna Salanterä

The complementary nature of query-based and directed health information exchange in primary care practice.

Joshua R. Vest Mark A. Unruh Lawrence P. Casalino Jason S. Shapiro

Identifying relations of medications with adverse drug events using recurrent convolutional neural networks and gradient boosting.

Xi Yang Jiang Bian Ruogu Fang Ragnhildur I. Bjarnadottir William R. Hogan Yonghui Wu

Extracting medications and associated adverse drug events using a natural language processing system combining knowledge base and deep learning.

Long Chen Yu Gu Xin Ji Zhiyong Sun Haodan Li Yuan Gao Yang Huang

Adverse drug event and medication extraction in electronic health records via a cascading architecture with different sequence labeling models and word embeddings.

Hong-Jie Dai Chu-Hsien Su Chi-Shin Wu

Adverse drug events and medication relation extraction in electronic health records with ensemble deep learning methods.

Fenia Christopoulou Thy Thy Tran Sunil Kumar Sahu Makoto Miwa Sophia Ananiadou

Ensemble method-based extraction of medication and related information from clinical texts.

Youngjun Kim Stéphane M. Meystre

An ensemble of neural models for nested adverse drug events and medication extraction with subwords.

Meizhi Ju Nhung T. H. Nguyen Makoto Miwa Sophia Ananiadou

A study of deep learning approaches for medication and adverse drug event extraction from clinical text.

Qiang Wei Zongcheng Ji Zhiheng Li Jingcheng Du Jingqi Wang Jun Xu Yang Xiang Firat Tiryaki Stephen Wu Yaoyun Zhang Cui Tao Hua Xu

2018 n2c2 shared task on adverse drug events and medication extraction in electronic health records.

Sam Henry Kevin Buchan Michele Filannino Amber Stubbs Özlem Uzuner

Advancing the state of the art in automatic extraction of adverse drug events from narratives.

Özlem Uzuner Amber Stubbs Leslie Lenert